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- Jit@jit.aber
Jit bookmarked Many-Core Engine (MCE) for Perl example 2856 days ago

MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank queuing model. Imagine the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the...

https://github.com/marioroy/mce-examples
- Neel@neelam
Neel commented on an answer to a question 2856 days ago

The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. https://tcga-data.nci.nih.gov/tcga/ https://cghub.ucsc.edu/
- EagleEye@santhilalsubhash
EagleEye answered the question Is there a list of human SNPs associated with a disease? 2856 days ago

COSMIC http://cancer.sanger.ac.uk/cosmic OMIM (includes gene ans SNP information) https://www.omim.org/about
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh commented on the question Is there a list of human SNPs associated with a disease? 2856 days ago

Looking for list of human SNPs associated with a disease? We need to evaluate a large number of human SNPs for their possible association with a disease. So far, the closest I've seen is SNPedia, but a database would be more helpful.
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh commented on the question Is there a list of human SNPs associated with a disease? 2856 days ago

Looking for list of human SNPs associated with a disease? We need to evaluate a large number of human SNPs for their possible association with a disease. So far, the closest I've seen is SNPedia, but a database would be more helpful.
- Jit@jit.aber
Jit created a new bio-script BASH script for SelfBLAST a genome 2857 days ago
- Jit@jit.aber
Jit bookmarked EasyBuild 2859 days ago

EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.

https://hpcugent.github.io/easybuild/
- Jit@jit.aber
Jit created a new bio-script Calculate ATGC percentage in parallel with perl 2860 days ago
- Jit@jit.aber
Jit posted to the wire 2861 days ago

Assembly and alignment http://schatzlab.cshl.edu/teaching/2012/CSHL.Sequencing/Whole%20Genome%20Assembly%20and%20Alignment.pdf
- Jit@jit.aber
Jit posted to the wire 2861 days ago

Do it yourself guide http://people.tamu.edu/~bilalwajidabbas/docs/Do_it_Yourself_Guide.pdf
- Jit@jit.aber
Jit posted to the wire 2863 days ago

Important PPT for Bioinformatics algo http://schatzlab.cshl.edu/teaching/2010/Lecture%202%20-%20Sequence%20Alignment.pdf #Algo #PPT #Pseudocode
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 2863 days ago

Studentship at ACTREC http://www.actrec.gov.in/data%20files/Vacancies/2017/Walk-in-scin-stud-JRF-AV.docx
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted a new ad in the Opportunity SRF Bioinformatics at JNU 2863 days ago
- Bulbul@bulbul
Bulbul posted a new ad in the Opportunity Studentship 2863 days ago
- Jit@jit.aber
Jit created a page Source Code and Pseudo Code !! 2863 days ago

An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally...
- Jit@jit.aber
Jit answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 2863 days ago

You might need to update the path of following in minimus2 script NUCMER=/home/Tools/MUMmer3.23/nucmerDELTAFILTER=/home/Tools/MUMmer3.23/delta-filterSHOWCOORDS=/home/Tools/MUMmer3.23/show-coords with re-installed mummer3 path. By default, it...
- Shruti Paniwala@shruti
Shruti Paniwala created a new bio-script Perl script to insert the DNA string in genome 2863 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 2864 days ago

Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked PANDASEQ 2864 days ago

PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable...

http://neufeldserver.uwaterloo.ca/~apmasell/pandaseq_man1.html
- Neel@neelam
Neel answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 2864 days ago

I got this new error, and just wondering why ??? 1: PREPARING DATA2,3: RUNNING mummer AND CREATING CLUSTERS# reading input file "TESTDATA/minimus.fasta.ntref" of length 3144# construct suffix tree for sequence of length 3144# (maximum reference...

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