BOL

Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the...

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...

When I tried Perl on my cluster/server it gives following error !! How to resolve it? $ perlperl: warning: Setting locale failed.perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_PAPER =...

BBMAP tools descriptions https://github.com/BioInfoTools/BBMap/blob/master/docs/ToolDescriptions.txt

App::cpanminus looks intersting, I will give it a try. This webpage also explain various approaches. http://web.archive.org/web/20120427144232/http://perl.jonallen.info/writing/articles/install-perl-modules-without-root Hope useful.

The easy way to #build stand-alone #Perl #apps http://perltricks.com/article/58/2014/1/5/The-easy-way-to-build-stand-alone-Perl-apps/

Find the DIRs in Linux: $ find / -name "DIR_NAME" #Linux #Find #DIR

I found App::cpanminus very handy in such cases. It create a local Perl5 directory in you profile. wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I...

Check out the OS type: $ cat /etc/*-release #Linuxv #OS

I am problem installing Perl module on cluster/server without root. Can you please recommend me a easy way or alternative way to install it.

#GAP-Seq: a method for identification of DNA #palindromes http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-394

Bioinformatics postdocs at http://evol.mcmaster.ca/cgi-bin/my_wrap/brian/evoldir/PostDocs/

The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts...

Yes you are right at some extend :| You should check this paper, http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-204 it provide a comparative table of all the available genome/chromosome visualization tools. Hope few of them...

Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom...