A recently published article on PLOS-Computational biology provides Ten Simple Rules for Writing a Postdoctoral Fellowship @ http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004934
Function
WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing either to build gapped scaffolds or usable as a common...
Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate...