BOL: All Site Activity

All Site Activity

- Radha Agarkar@radhaagarkar
Radha Agarkar bookmarked Stand-alone programs for Bioinformatician 3111 days ago

This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications...

http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
- Radha Agarkar@radhaagarkar
Radha Agarkar bookmarked Bpipe - a tool for running and managing bioinformatics pipelines 3111 days ago

Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google...

http://docs.bpipe.org/
- Radha Agarkar@radhaagarkar
Radha Agarkar bookmarked mafTools 3111 days ago

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

https://github.com/dentearl/mafTools
- Radha Agarkar@radhaagarkar
Radha Agarkar created a page Tools for Searching Repeats And Palindromic Sequences 3111 days ago

What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...
Comments
- Jit@jit.aber
  
  Jit 2218 days ago
  I wrote a tools "Palindromer" to find palindromes in whole genome sequences. You can try https://github.com/jnarayan81/Palindromer . I am happy to improve it, if any features are requested.
- Rahul Nayak@rahul
  
  Rahul Nayak 1740 days ago
  Check out this GAP-Seq: a method for identification of DNA palindromes
  https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-394
- Radha Agarkar@radhaagarkar
Radha Agarkar posted to the wire 3111 days ago

Web BLAST ftp://ftp.ncbi.nlm.nih.gov/blast/documents/web_blast.pl #BLAST #Web #Online
- Radha Agarkar@radhaagarkar
Radha Agarkar uploaded the file BLOSUM50 Matrix 3111 days ago
- Radha Agarkar@radhaagarkar
Radha Agarkar created a new bio-script Needleman-Wunsch Algorithm in Perl 3111 days ago
- Radha Agarkar@radhaagarkar
Radha Agarkar posted a new ad in the Opportunity Senior Project Fellow Bioinformatics at NBRI 3111 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary voted on the poll Do you think it's important for everyone to pass BINC exam? in the group BioInformatics National Certification (BINC) 3111 days ago
- Abhi@abhinav
Abhi commented on a page titled SLURM basics ! 3112 days ago

In addition to that, I found this weppage also useful http://www.hpc2n.umu.se/node/877
- Abhi@abhinav
Abhi posted to the wire 3112 days ago

Alignment software http://molbiol-tools.ca/Alignments.htm #Tools #Software #Alignment
- Abhi@abhinav
Abhi commented on a page titled Commercial and public next-gen-seq (NGS) software in the group Next Generation Sequencing (NGS) 3112 days ago

A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Datahttp://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003737 Software: http://sourceforge.net/projects/sat-assembler/ A...
- Abhi@abhinav
Abhi voted on the poll Do you think it's important for everyone to pass BINC exam? in the group BioInformatics National Certification (BINC) 3112 days ago
- Abhi@abhinav
Abhi bookmarked Stampy 3112 days ago

Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of...

http://www.well.ox.ac.uk/project-stampy
- Abhi@abhinav
Abhi bookmarked Hagfish - assess an assembly through creative use of coverage plots 3112 days ago

Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or...

https://github.com/mfiers/hagfish
- Neel@neelam
Neel voted on the poll Do you think it's important for everyone to pass BINC exam? in the group BioInformatics National Certification (BINC) 3112 days ago
- Neel@neelam
Neel posted to the wire 3112 days ago

Useful Babraham Bioinformatics Projects http://www.bioinformatics.babraham.ac.uk/projects/download.html #Bioinformatics #Projects #Tools
- Neel@neelam
Neel bookmarked GKNO 3112 days ago

gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise...

http://gkno.me/
- Neel@neelam
Neel bookmarked MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping 3112 days ago

MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies,...

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0090581
- Jit@jit.aber
Jit bookmarked RCircos: an R package for Circos 2D track plots 3112 days ago

RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It...

https://bitbucket.org/henryhzhang/rcircos/src

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