I have reference sequeces (in fasta format) and alignment files (small RNA reads from 4 different conditions aligned to genome in SAM/BAM/BED/BEDgraph format) as input files. I'm interested in comaparing the alignments of different conditions. So,...
Hi Anushree,
I am sorry, but your question confuses me. You have already tried the best genome browsers like IGV (as per my working experience). I guess, you can achieve all as IGV displays only one coverage track per alignment with preference and...