BOL: All Site Activity

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- Bhavana Rahangdale@bhavana14
Bhavana Rahangdale is now a friend with Agampreet Kaur 3785 days ago
Bhavana Rahangdale@bhavana14
Agampreet Kaur@agampreet
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 3787 days ago

Bioinformatics Workshops & Training !! http://stephenturner.us/edu.html #Bioinf #Course
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 3787 days ago

Cytoscape apps! http://apps.cytoscape.org #networkVisualization
- Jit@jit.aber
Jit published a news post Breaking chromosomes to study cancer !!! 3787 days ago

Using RNA-Guided Endonuclease (RGEN) technology or CRISPR/Cas9 genome engineering technology, CNIO and CNIC researchers have shown that it is possible to obtain such chromosomal translocations.
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 3787 days ago

Cattle genetic code cracked in detail ! http://feedstuffs.com/story-cattle-genetic-code-cracked-detail-45-115065 #1000Bull #Seq #Omics
- Surajeet@surajeet
Surajeet answered the question Can you please recommend me some tutorial for NGS data analysis? 3787 days ago

Hi Alok, NGS Family Analysis Tutorial by Golden Helix is much useful and user friendly. http://doc.goldenhelix.com/SVS/tutorials/ngs_family_analysis/ngs_family_analysis.pdf GATB: Genome Assembly & Analysis Tool Box is yet another useful...
- Jitendra Narayan@admin
Jitendra Narayan posted a new ad in the ResearchLabs Nuclear Dynamics Lab 3787 days ago
- Surajeet@surajeet
Surajeet posted a new ad in the ResearchLabs Landry Lab 3787 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary answered the question What are the best known workflow or tutorial for SNP calling? 3789 days ago

Hi Neelam, I guess this seep catalog of human genetic variation analysis of 1000 genomes are much useful. http://www.1000genomes.org/analysis Thanks
- John Parker@parker
John Parker answered the question What are the best known workflow or tutorial for SNP calling? 3789 days ago

Hi Neelam, My GATK workflow for a pair end Illumina data. SNPs calling using following steps:Downloaded the SNP and indels databases from ftp://gsapubftp-anonymous@ftp.broadinstitute.org (bunlde -> 1.5 -> hg19) The exome intervals using UCSC...
- John Parker@parker
John Parker is now a friend with MineshJ 3789 days ago
John Parker@parker
MineshJ@MineshJ
- MineshJ@MineshJ
MineshJ is now a friend with John Parker 3789 days ago
MineshJ@MineshJ
John Parker@parker
- Jitendra Narayan@admin
Jitendra Narayan posted to the wire 3790 days ago

Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities
- Jit@jit.aber
Jit answered the question What are the best known workflow or tutorial for SNP calling? 3790 days ago

Hi Neelam, The extraction of single nucleotide polymorphisms (SNPs) from the raw genetic sequences involves many processing steps and the application of a diverse set of tools. The pipeline includes quality control, mapping of short reads...
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh answered the question What are the best known workflow or tutorial for SNP calling? 3791 days ago

Hi Poonam, The various aspect of SNP calling is covered in this recent http://www.ncbi.nlm.nih.gov/pubmed/21478889 entitled "A framework for variation discovery and genotyping using next-generation DNA sequencing data" from authors of GATK. In...
- Poonam Mahapatra@poonam
Poonam Mahapatra answered the question What are the best known workflow or tutorial for SNP calling? 3791 days ago

Hi Neelam, There are several workflow, but you might find this SNP pipeline useful. It uses GATK for SNP calling which currently starts with an alignment from BWA. In nutshell, the flow involves realigning the BAM file using GATK's -> SNP...
- Neel@neelam
Neel asked What are the best known workflow or tutorial for SNP calling? 3792 days ago
- Neel@neelam
Neel bookmarked Integrative Genomics Viewer (IGV) tutorial in the group Next Generation Sequencing (NGS) 3792 days ago

The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted...

https://wikis.utexas.edu/display/bioiteam/Integrative+Genomics+Viewer+%28IGV%29+tutorial
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh commented on a bookmark Next Generation Sequencing (NGS) Tutorials in the group Next Generation Sequencing (NGS) 3792 days ago

Challenges and Solutions in the Analysis of Next Generation Sequence Data http://lh3lh3.users.sourceforge.net/download/sam-20100630.pdf
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted to the wire 3792 days ago

Linux one-liner. https://wikis.utexas.edu/display/bioiteam/Scott%27s+list+of+linux+one-liners #Linux #Oneliner #NGS

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