Rahul Agarwal
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PLAR: Pipeline for lncRNA annotation from RNA-seq data
By Abhi 1029 days agowww.weizmann.ac.il - Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...genomenotebook
By Abhi 561 days agodbikard.github.io - https://dbikard.github.io/genomenotebook/ Install pip install genomenotebook How to use Create a simple genome browser with a search bar. The sequence appears when zooming in. import genomenotebook as gn g=gn.GenomeBrowser(genome_path,...PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
By Abhi 423 days agogithub.com - Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies,...
Regular Expression Cheat Sheet
By Jitendra Narayan 4133 days ago Comments (2)The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly regular expression cheat sheet, hence write our own cheat...Sorghum genome Sequenced!!
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By Jitendra Narayan 4053 days agoRoyal Society GlaxoSmithKline Prize Lecture given by Professor Adrian Bird CBE FMedSci FRS on Tuesday 22 January 2013. Adrian Bird CBE FMedSci FRS is the Buchanan Chair of Genetics at the University of Edinburgh. The human genome sequence has been...Update Genome Workbench 2.7.15 released
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Lab focus is to elucidate fundamental principles, new mechanisms, machineries and emergent properties that are involved in maintaining the genome and gene expression programmes for improvements in lifelong health and well-being for all. More at...deepTools
By Martin Jones 3646 days agoUser-friendly tools for the normalization and visualization of deep-sequencing dataVital-IT
By Abhi 3606 days agohttp://www.vital-it.ch/ - Vital-IT is a bioinformatics competence center that supports and collaborates with life scientists in Switzerland and beyond. The multi-disciplinary team provides expertise, training and maintains a high-performance computing (HPC) and storage...
