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Bioinformatics Lecture Notes
Libraries or management tools for high throughput sequencing data
Tools to access the quality of your assembled genome !
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LEGE
Tools to access the quality of your assembled genome !
Tools to access the quality of your assembled genome !
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History
Tools to access the quality of your assembled genome !
Last updated
135 days ago
by
LEGE
Tool
Access
Quality
Genome
FASTA VALIDATOR
+
SEQKIT RMDUP
: FASTA validation
GENOMETOOLS GT GFF3VALIDATOR
: GFF3 validation
ASSEMBLATHON STATS
: Assembly statistics
GENOMETOOLS GT STAT
: Annotation statistics
NCBI FCS ADAPTOR
: Adaptor contamination pass/fail
NCBI FCS GX
: Foreign organism contamination pass/fail
BUSCO
: Gene-space completeness estimation
TIDK
: Telomere repeat identification
LAI
: Continuity of repetitive sequences
KRAKEN2
: Taxonomy classification
HIC CONTACT MAP
: Alignment and visualisation of HiC data
MUMMER
→
CIRCOS
+
DOTPLOT
&
MINIMAP2
→
PLOTSR
: Synteny analysis
MERQURY
: K-mer completeness, consensus quality and phasing assessment
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