Tools to access the quality of your assembled genome !
- FASTA VALIDATOR + SEQKIT RMDUP: FASTA validation
- GENOMETOOLS GT GFF3VALIDATOR: GFF3 validation
- ASSEMBLATHON STATS: Assembly statistics
- GENOMETOOLS GT STAT: Annotation statistics
- NCBI FCS ADAPTOR: Adaptor contamination pass/fail
- NCBI FCS GX: Foreign organism contamination pass/fail
- BUSCO: Gene-space completeness estimation
- TIDK: Telomere repeat identification
- LAI: Continuity of repetitive sequences
- KRAKEN2: Taxonomy classification
- HIC CONTACT MAP: Alignment and visualisation of HiC data
- MUMMER → CIRCOS + DOTPLOT & MINIMAP2 → PLOTSR: Synteny analysis
- MERQURY: K-mer completeness, consensus quality and phasing assessment
