Rahul Nayak
A Bioinformatician
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Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
By BioStar 1715 days agogithub.com - Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version...Precision Medicine
By Rahul Agarwal 4111 days agowww.cbsnews.com - Coupling established clinical–pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements — hence the term “Precision...MetaPred2CS
By Manisha Mishra 2824 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...Role of microbes in forensic science
By Rahul Agarwal 4075 days ago‘Microbial clock’ determine time of deathA-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4031 days agoMore is the A -allele, More is fairer the Skin !!R.A Bioinformatics at JNU, Delhi
R.A Jobs opportunity in Jawaharlal Nehru University (JNU) on purely temporary basis Project Title : "Structural and functional characterization of serine biosynthetic pathway enzymes from Entamoeba histolytica" No. of Post :...
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 2575 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances...Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 2525 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Jit 2397 days agogithub.com - Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
By Shruti Paniwala 2359 days agojapsa.readthedocs.io - npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple...
