Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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Does anyone have Nanopore latest updates?
Started by Poonam Mahapatra 4123 days ago Replies (34) Last reply by Priya Singh 2757 days agoThere was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and miniaturised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific research,...A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
By Shani 3679 days agoLifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from variable sources. GeneAnalytics provides gene associations with tissues &...Alignment of closely related whole genomes/scaffolds
By Rahul Nayak 3223 days ago Comments (1)www.cs.utoronto.ca - With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly...Finishing !!
By Jit 2746 days agowww.cbcb.umd.edu - The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2552 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...MIX: Combining multiple assemblies from NGS data
By Rahul Nayak 2394 days agogithub.com - Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices...Memories Can Be Passed Down Through DNA
By Radha Agarkar 3852 days agoThe premise of Assassin's Creed is the reliving of other people's memories stored inside DNA. Well scientists have found that in mice, it actually happens! Anthony is joined by special guest and our friend Tara Long from Hard Science to explain how...HALC: High throughput algorithm for long read error correction
By Jit 2362 days ago Comments (1)github.com - HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig...KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
By Jit 2335 days ago Comments (1)github.com - KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in...A History of Bioinformatics (in the Year 2039)
By Martin Jones 3778 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039
