Rahul Agarwal
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PureCN: copy number calling and SNV classification using targeted short read sequencing
By Jit 2866 days agobioconductor.org - This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with...Bioinformatics JRF/SRF position at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics -...LoRMA: A tool for correcting sequencing errors in long reads
By Abhimanyu Singh 2837 days agogite.lirmm.fr - An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...nQuire: a statistical framework for ploidy estimation using next generation sequencing
By Jit 2810 days agogithub.com - nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where...URDIP Pune Bioinformatics SRF/PA Openings
CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS NCL Campus, S.No.113,114, Pashan, Pune 411 008 ADVERTISEMENT NO. - URDIP/ 5/2014 Learning opportunity for young Science and Engineering professionals to make a career in...lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2756 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...Bioinformatics SVIMS Project Assistant Walk IN
SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES TIRUPATI, ANDHRA PRADESH, INDIA- 517 507 BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS...Katuali is a flexible consensus pipeline implemented in Snakemake to basecall, assemble, and polish...
By Jit 2700 days agogithub.com - Run a pipeline processing fast5s to a consensus in a single command. Recommended fixed "standard" and "fast" pipelines. Interchange basecaller, assembler, and consensus components of the pipelines simply by changing the target filepath. Seemless...Nieduszynski Group
Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integrity and produce the large number of cells that make up a...
