Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
By Jit 1787 days agoftp.genomics.org.cn - RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error...Metassembler: merging and optimizing de novo genome assemblies
By Rahul Nayak 2393 days agosourceforge.net - Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multiple algorithms in an attempt to find the single best...ARC: pipeline which facilitates iterative, reference guided de novo assemblies
By Jit 2313 days agoibest.github.io - ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble...NovoGraph: building whole genome graphs from long-read-based de novo assemblies
By Jit 2201 days agogithub.com - NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-based de novo sequence assemblies. We then provide a proof of...ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
By LEGE 200 days agogithub.com - ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate...How Genes are Regulated: Transcription Factors
By Jitendra Narayan 4098 days agoEach cell in our body inherits the same master copy of DNA, but different cell types use it differently. Transcription Factors help influence which genes are used in which cell. Understanding how these dynamic proteins physically interact with DNA...Molecular Genetics Lecture
By Rahul Agarwal 4077 days agowww.youtube.com - "Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and...Scripted DNA !!!
By Jit 3387 days agoAs per bioinformatician DNA is partially scripted ;) You dont believe in it. Please have a look at image carefully:)FSA: Fast Statistical Alignment
By Jit 2848 days agofsa.sourceforge.net - FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a...
