R and Bioconductor
Jitendra Narayan 4839 days ago
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Reverse Complement Problem Solved with Perl
Last updated 4140 days ago by JitQuestion at http://rosalind.info/problems/1b/ #Find the reverse complement of a DNA string.#Given: A DNA string Pattern.#Return: Pattern, the reverse complement of Pattern.use strict;use warnings;my $string="AAAACCCGGT";my $finalString="";my %hash...-
Clump Finding Problem Solved with Perl
Last updated 3221 days ago by JitThe question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl 
Five key traits to seek out in potential bioinformatics candidates !!!
By Jit 4078 days agoOnce your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:-Cancer research database
By Neel 4056 days agoResearchers in Andhra Pradesh have developed a database to identify genes that are common in tumours to provide their colleagues with easy access to insights into the genetic alterations in cancer.MAKER
By Jitendra Narayan 3897 days ago Comments (1)www.yandell-lab.org - MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats,...liftover
By Jitendra Narayan 3896 days ago Comments (1)github.com - Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at...svelter
By Jitendra Prajapati 3875 days agogithub.com - This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by...-
List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3796 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in... PhyloGrapher - Graph Visualization Tool
By Jitendra Prajapati 3838 days agowww.atgc.org - PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In...
