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Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 1808 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...Heatmapper: web-enabled heat mapping for all
By Jit 2292 days agowww2.heatmapper.ca - Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety...Surrogate Variable Analysis (SVA)
By Jit 3724 days agoThe sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment.Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1801 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...Encode sequencing data freely available to download and use for academic means
By Rahul Agarwal 3955 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...Integrative RNA and ChIP-Seq analysis of regulatory T-cells
By Strand 3446 days agoIntegrative RNA and ChIP-Seq analysis of regulatory T-cellskallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
By Jit 2194 days ago Comments (1)pachterlab.github.io - kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for...Understanding RNA-Seq Normalization Methods: TPM vs. FPKM vs. CPM
By Neel 30 days agoChoosing the right normalization method depends on the specific objectives of your RNA-Seq analysis. TPM’s proportionality and robustness make it the preferred choice for most applications, while CPM serves well for differential expression...transrate: Understanding your transcriptome assembly
By Neel 2372 days agohibberdlab.com - Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This...Project Fellow Positions at CSIR-IHBT Palampur
Category: opportunity:Jobs
Salary: Rs.12,000/- P.M. Rs.14,000/- P.M. as per the funds provisions in the respective projects.
Condition: New
By Nitesh 3327 days agoWalk-in-Interview is scheduled to be held on the date as mentioned below for selection of Suitable candidates in the following areas under the different Sponsored/CSIR Networked Projects on purely temporary basis for the duration of the project(s)...
