To find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide:
Install RepeatMasker: First, you need to install RepeatMasker on your system. You...
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM
perusio/nginx-munin - A set of plugins for monitoring nginx with Munin
openresty/lua-resty-memcached - Lua memcached client driver for the ngx_lua based on the...
doua.prabi.fr - One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information.
Assemble RepeatMasker hits into complete TE copies,...
dash.plot.ly - Dash is a web application framework that provides pure Python abstraction around HTML, CSS, and JavaScript.
Dash Bio is a suite of bioinformatics components that make it simpler to analyze and visualize bioinformatics data and interact with them in...
May 21, 2014 - Current Topics in Genome Analysis 2014
A lecture series covering contemporary areas in genomics and bioinformatics. More: http://www.genome.gov/COURSE2014
github.com - Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more.
Run pip...
TIP: By default, environments are installed into the envs directory in your conda directory. Run conda create --help for information on specifying a different path.
Use the Terminal or an Anaconda Prompt for the...
github.com - There is a directory for each chapter of the book. Each directory contains a test.py program you can use with pytest to check that you have written the program correctly. I have included a short README to describe each exercise....