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DRAM: Distilled and Refined Annotation of Metabolism
By BioStar 142 days agogithub.com - DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the...Find predicted CRISPR sites using Ensembl
By Jit 3043 days agoCas9 restricts DNA at specific Protospacer Adjacent Motifs (PAMs), which is species-dependent (for example, 5′ NGG 3′ for Streptococcus pyogenes Cas9).Senior Manager (Bioinformatics Operations) at RGCB, India
No. RGCB/ADVT/ADMN&TECH/01/2016 August 17, 2016 RGCB invites applications for the following positions from Indian citizens with prescribed qualifications. Full details including job description, additional desirable qualifications, etc....WALK-IN INTERVIEW @ JIPMER
Department of Preventive and Social Medicine , JIPMER, Puducherry –605006 WALK-IN INTERVIEW JIP/PSM/INDO-US TB/ 2016/ Walk-in-interview for the following vacant posts funded by Department of Biotechnology, Govt.of India for the project...JRF Bioinformatics at MANIT, India
Advt. No.: Maths./577/2016 Date: 12/08/2016 JRF Bioinformatics Job Position in Maulana Azad National Institute of Technology (MANIT) purely temporary basis Project Title : “Computational Approach to Study Complex Biological Network of Diseases...EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
By Shruti Paniwala 1429 days agogithub.com - EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting...miniasm: very fast OLC-based de novo assembler for noisy long reads
By Jit 2555 days agogithub.com - Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
By Jit 2386 days agogithub.com - HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read...SRF Bioinformatics at Bose Institute, India
Advt. No. S/DPB(CB)/17/2016-17 Junior Research Assistant/ Senior Research Assistant Job vacancies in Bose Institute on temporary basis Project Title : “Genome wide transcriptome analysis to identity MYMIV-stress related genomic resources of...Entrez Direct: E-utilities on the UNIX Command Line
By Anjana 2959 days agowww.ncbi.nlm.nih.gov - Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line...
