github.com - Run a pipeline processing fast5s to a consensus in a single command.
Recommended fixed "standard" and "fast" pipelines.
Interchange basecaller, assembler, and consensus components of the pipelines simply by changing the target filepath.
Seemless...
github.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds.
Here is an illustration of this pipeline:
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github.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...
Ch. Charan Singh University, Meerut
http://molbiolabccsumrt.webs.com/
Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching...
github.com - judi comes from the idea of bringing the power and efficiency of doit to execute any kind of task under many combinations of parameter settings.
https://github.com/ncbi/JUDI
www.tutorialspoint.com - Online coding group for most of the programming languages.
Code in almost all popular languages using Coding Ground. Edit, compile, execute and share your projects, 100% cloud.
http://www.tutorialspoint.com/codingground.htm
github.com - iMAGine is a metagenomic workflow which includes filtering, assembling, and binning.
This workflow includes the following tools which are needed to be installed in the system.
fastp
spades assembler
QUAST
bwa
samtools
metabat2
CheckM
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