Jitendra Prajapati
A Bioinformatician
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Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
By Jit 2553 days agoschatzlab.cshl.edu - Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used...Barrnap: Bacterial ribosomal RNA predictor
By Abhimanyu Singh 2753 days agogithub.com - Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output....MeDuSa: a multi-draft based scaffolder
By Abhimanyu Singh 2476 days agogithub.com - MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organisms to determine the correct order and orientation of the contigs. MeDuSa...CAR: Reconstructing Contiguous Regions of an Ancestral Genome
By Abhimanyu Singh 2748 days agowww.bx.psu.edu - We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produce a map...Installing Bandage on Ubunty !
By Jit 2393 days agoinstructions successfully build Bandage on a fresh installation of Ubuntu 14.04Tryst with a Bioinformatician # Dr Altan Kara
By Jitendra Narayan 2565 days agoDr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center.Hapsembler: An Assembler for Highly Polymorphic Genomes
By Jit 2379 days agocompbio.cs.toronto.edu - Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454....Postdoctoral scholarship in Bioinformatics at KTH
The School of Biotechnology offers a curriculum that reflects the multidisciplinary nature of Biotechnology, integrating theoretical and applied science in undergraduate and graduate courses. The school has six departments with about 300 employees,...India and Germany to begin joint research in the area of 'Bioinformatics in Health Research'
By Rahul Nayak 2503 days agoTo facilitate bilateral cooperation in biotechnology between the scientific communities of India and Germany, the Department of Biotechnology (DBT) will soon begin collaborative research in the identified priority area of 'Bioinformatics in Health...
