Jit
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COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
By Jit 2545 days agoftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...pybedtools
By Shruti Paniwala 3750 days agopybedtools is a Python wrapper for Aaron Quinlan's BEDtools programsReference-free prediction of rearrangement breakpoint reads
By Neel 2453 days agocode.google.com - lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset with a sequencing...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 2389 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...Bioinformatics JRF/SRF position at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics -...BlasR Mapping single molecule sequencing reads using Basic Local Alignment with Successive...
By Jit 2377 days agobix.ucsd.edu - BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion...Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2364 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...URDIP Pune Bioinformatics SRF/PA Openings
CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS NCL Campus, S.No.113,114, Pashan, Pune 411 008 ADVERTISEMENT NO. - URDIP/ 5/2014 Learning opportunity for young Science and Engineering professionals to make a career in...JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
By Jit 2340 days agogithub.com - JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled...Bioinformatics SVIMS Project Assistant Walk IN
SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES TIRUPATI, ANDHRA PRADESH, INDIA- 517 507 BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS...
