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3rd Annual Next Generation Sequencing Asia Congress 2013 at Singapore, Singapore
The 3rd Annual Next Generation Sequencing Asia Congress is to be held on the 22nd and 23rd of October 2013 in Singapore. Over the 2 days, the conference will provide an overview of the current options of next-generation sequencing platforms,...Mobyle: a new full web bioinformatics framework
By Jit 2650 days agoacademic.oup.com - Mobyle, to provide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical...LRCstats: a tool for evaluating long reads correction methods
By Aaryan Lokwani 2423 days agogithub.com - LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Rahul Nayak 2705 days agogithub.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good...The genome factory !!!
By Madhvan Reddy 4102 days agoWorld’s first $1,000 genome enables ‘factory’ scale sequencing for population and disease studiespbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2513 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1878 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...
Next generation sequencing in R or bioconductor environment
Last updated 3965 days ago by John Parker Comments (3)There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It...XAMPP: Starting Apache fail Ubuntu
By Ram Yash Pal 3960 days ago Comments (1)Just press Ctrl+Alt+T on your keyboard to open Terminal. When it opens, run the command(s) below:Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
By Neel 2365 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2...
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