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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
By Jit 1351 days ago Comments (1)github.com - DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools...Bioinformatics JRF/SRF position at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY
NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY LBS, CENTRE, PUSA CAMPUS, IARI NEW DELHI NEW DELHI – 110 012 WALK- IN –INTERVIEWS Eligible candidates may appear in Walk-in-Interview on May 23, 2014 at 10 AM for the posts of Research...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 2686 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...A History of Bioinformatics (in the Year 2039)
By Martin Jones 3779 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039jobTree based python wrapper to run the genome simulation tool suite Evolver
By Jit 2545 days agogithub.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...Scientists map 17,294 proteins produced in human body
By Jit 3834 days ago17,294 proteins mapped in 30 organs of human bodyCAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
By Rahul Nayak 2525 days agohttps://cblab.org/camsa/ - CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of...TAREAN: A computational tool for identification and characterization of satellite DNA from...
By Surabhi Chaudhary 2387 days agobitbucket.org - TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their...Genomics and Personalized Medicine
By Rahul Nayak 3830 days ago(October 20, 2009) Michael Snyder, Professor of Genetics and Chair of the Department of Genetics at Stanford, discusses advances in gene sequencing, the impact of genomics on medicine, the potential for personalized medicine. and efforts at Stanford...“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
By Poonam Mahapatra 2367 days agodoua.prabi.fr - One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies,...
