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Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4122 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff...-
Bioinformatics Services / CRO Services
Last updated 1845 days ago by RASA Life SciencesRASA is set to provide premium technical and scientific services in a form of solutions, product development and training. .We are also very proficient in providing the high quality Research & Development services in life science informatics... Five points for bioinformatics software/tools
By Jitendra Narayan 4129 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools-
Useful Publications and Websites for Deep Sequencing Data Analysis
Last updated 3982 days ago by Rahul NayakGlobal overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense from sequence reads: methods for... Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 1992 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.The anatomy of successful computational biology software
By Jitendra Narayan 4062 days agoCreators of software widely used in computational biology discuss the factors that contributed to their successFQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ...
By Shruti Paniwala 1475 days agogithub.com - FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The...Porechop: tool for finding and removing adapters from Oxford Nanopore reads
By Rahul Nayak 2370 days agogithub.com - Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2301 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...Managing and Analyzing Next-Generation Sequence Data
By Rahul Agarwal 3850 days agowww.ploscompbiol.org - Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they must be able to effectively react to new types of experimental...
