Radha Agarkar
A Bioinformatician
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HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
By Jit 2430 days agogithub.com - HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read...Bioinformatics Project Assistant at NITW
NATIONAL INSTITUTE OF TECHNOLOGY WARANGAL – 506 004 DEPARTMENT OF BIOTECHNOLOGY No. NITW/Bio/ Date: 30th March 2015 ADVERTISEMENT FOR PROJECT FELLOW (Research Staff) Applications are invited for the post of Project Fellow (Research...gSearch: a fast and flexible general search tool for whole-genome sequencing
By Jit 2347 days agoml.ssu.ac.kr - gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a...Bioinformatics RA at IVRI
A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural...Indexcov: fast coverage quality control for whole-genome sequencing
By Jit 2324 days ago Comments (1)github.com - indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a...JRF Bioinformatics @ NATIONAL INSTITUTE OF IMMUNOLOGY NEW DELHI-110067
Applications are invited for the position of Junior Research Fellow (Project)/Senior Research Fellow (Project) for the following time-bound sponsored project as per the details given below: 1. “Development of bioinformatics methods for...EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2196 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...IGIB Recruitment 2015 – Project Scientist
IGIB Recruitment 2015 – Project Scientist & SPF Posts: CSIR – Institute of Genomics & Integrative Biology (IGIB) has issued notification for the recruitment of Project Scientist, Sr Project Fellow vacancies on temporary basis for project...mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
By Jit 1883 days agogithub.com - mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a...
BINC Sample Question Paper !!!
By Jitendra Narayan 3555 days agoBINC sample question paper round TWO.
