Radha Agarkar
A Bioinformatician
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shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
By BioStar 2103 days agogithub.com - Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59)
The Department of Biotechnology, group “Genome Bioinformatics” is currently seeking a Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59) Extent of employment: 30 Hours per Week Duration of employment: 1st...COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
By Jit 3226 days agoftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...Reference-free prediction of rearrangement breakpoint reads
By Neel 3134 days agocode.google.com - lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset with a sequencing...JRF/SRF at University of Hyderabad
Applications are invited for the following post of Junior Research Fellow (temporary position coterminous with the project) under DBT funded research project on ““Understanding the functions of α1β1γ1/α2β1γ1 selective AMPK Modulators in dissecting...Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 3045 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...Faculty Positions at CENTRAL UNIVERSITY OF PUNJAB, BATHINDA
Advertisement No. T/NT-01 (2014) Faculty Positions The Central University of Punjab (CUP), Bathinda will be having the Schools and Departments as given in Table-I. The University invites applications from eligible candidates for the posts of...JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
By Jit 3021 days agogithub.com - JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled...JRF in Bioinformatics @ Bioinformatics Centre, North-Eastern Hill University
Applications with complete bio-data are invited for JRF (3) and Project Assistant (1) in a DBT project "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"...
