github.com - What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosomal DNAs...
kallisto
Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets)
Software (C++)
https://pachterlab.github.io/kallisto/
Sailfish
Estimation of isoform abundances...
PhD positions in Genova at DIBRIS - Univ. of Genoa (Italy)
http://www.disi.unige.it/person/MasulliF/ricerca/PhDinGenova2017.html
The call for some funded positions for the 3 years PhD studies at the Department of Informatics, Bioengineering,...
The School of Biotechnology offers a curriculum that reflects the multidisciplinary nature of Biotechnology, integrating theoretical and applied science in undergraduate and graduate courses. The school has six departments with about 300 employees,...
mesquiteproject.org - Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics,...
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners.
File System ls — list items in current directory ls...
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic
https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP detection: dealing with the data...