Jit
Enthusiast computational biologist with business dream !!!
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shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
By BioStar 1422 days agogithub.com - Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...RA at CSIR-URDIP
CSIR - UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS (CSIR- URDIP) Adv. No. URDIP/ 15/2015 Opportunity for young Bioinformatics Professionals to make a career in the area of Intellectual Property CSIR has set up a Unit for...
Run miniasm assembler on nanopore reads !
Last updated 2534 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Project Fellow at IHBT - Palampur, Himachal Pradesh
The Institute is working relentlessly on developing technologies for sustainable utilization of Himalayan bioresources, and in the area of tea, floriculture, bamboos and medicinal and aromatic plants. Looking at the mission of the Institute,the...TAREAN: A computational tool for identification and characterization of satellite DNA from...
By Surabhi Chaudhary 2386 days agobitbucket.org - TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their...Assistant Professor/ Professor at Central University of South Bihar
Central University of South Bihar (Established under Central Universities Act, 2009) BIT Campus, PO: B.V. College, Patna – 800 014 (Bihar) Employment Notice No. CUSB / 27 / Faculty / 2015 Appointment for Faculty Positions Applications...npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
By Shruti Paniwala 2359 days agojapsa.readthedocs.io - npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple...JRF in Bioinformatics @ Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram
Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram Job Code: 060815(10)Y Jr Research Fellow Posts At Rajiv Gandhi Centre for Biotechnology Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications to recruit on vacant...SimLoRD: A read simulator for third generation sequencing reads
By Aaryan Lokwani 2286 days agobitbucket.org - SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference...Senior Research Fellow (SRF) Bioinformatics at AIIMS, India
DEPARTMENT OF BIOTECHNOLOGY ALL INDIA INSTITUTE OF MEDICAL SCIENCES NEW DELHI-110029 Requirement of Senior Research Fellow Applications are invited for the following vacancy under Research project entitled “Exploiting temporal transcription...
