Jit
Enthusiast computational biologist with business dream !!!
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FastProNGS: fast preprocessing of next-generation sequencing reads
By Rahul Nayak 1898 days agogithub.com - FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...Assistant Professor - Computational Biology and Bioinformatics in Navi Mumbai
No. ACTREC / ADVT-A/2/2015 Pay in Pay band and Grade Pay : PB-3 (Rs 15,600-39,100) Pay in pay band Rs 21,900+ G.P. of Rs 7,600 Total emoluments = 82,000/- p.m. & nbsp Educational Qualification : Ph.D. or MD/Ph.D. Experience : Post MD /...HairSplitter: assembling long reads in an unknown number of haplotypes
By BioStar 1188 days agohal.archives-ouvertes.fr - Pros and cons of HairSplitter Limitations of HairSplitter: Not very fast: it re-polishes the whole assembly Limited in the number of haplotypes Strengths of HairSplitter: Very modular, can be used with any assembler Naive: makes no...ArrayGen Next Generation Genome Browser Coming Soon !!!
By ArrayGen Technologies 3749 days agoArrayGen Technologies - www.arraygen.comJabba: Hybrid Error Correction for Long Sequencing Reads
By Jit 2985 days agogithub.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by...Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit,...
By Neel 2222 days agowww.phrap.org - Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence...Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation...Microscope
By Jitendra Narayan 3657 days agomicroscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscopeSvABA: Structural variation and indel detection by local assembly
By Jit 2190 days agogithub.com - SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li....
