Jit
Enthusiast computational biologist with business dream !!!
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Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2938 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...ArrayGen Next Generation Genome Browser Coming Soon !!!
By ArrayGen Technologies 3958 days agoArrayGen Technologies - www.arraygen.comDeepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2868 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by...NextDenovo: string graph-based de novo assembler for TGS long reads
By Jit 2464 days agogithub.com - NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation...Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Jit 2428 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike...Microscope
By Jitendra Narayan 3866 days agomicroscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscopeSqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 2239 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...PostDoc at IISER -TVM
Postdoctoral Fellowship/ Research Associateship Eligibility : M Phil / Phd Location : Thiruvananthapuram Last Date : 30 Apr 2016 Hiring Process : Face to Face Interview IISER -TVM The Postdoctoral Fellowship/Research Associateship...
