Jit
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Professor and Associate Professors (PB-IV) Assistant Professors (PB-III) Job at IIIT, Allahabad
Indian Institute of Information Technology, Allahabad Devghat, Jhalwa, Allahabad – 211012, Uttar Pradesh, India E-mail: contact@iiita.ac.in, faculty.applications@iiita.ac.in Web: www.iiita.ac.in Phone : 0532-2922031/27/67 Applications are...karyoploteR: plot whole genomes with arbitrary data
By Abhimanyu Singh 2465 days agobernatgel.github.io - karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR...
Find certain files/documents in Linux OS
Last updated 3862 days ago by Rahul NayakAs bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most...GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
By Abhimanyu Singh 2719 days agogithub.com - GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which...Raghava's Group
Raghava's group is known for developing open source software or web servers. Group have developed large number of web-based services. Find more at http://www.imtech.res.in/raghava/-
List of visualization tools for genome alignments
Last updated 2464 days ago by Rahul NayakGenome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which... Assistant Professor at SARDAR PATEL UNIVERSITY
SARDAR PATEL UNIVERSITY Centre for Interdisciplinary Studies in Science and Technology No.: SPU/CISST/Advt./2014-15/519 ADVERTISEMENT for Teaching Positions (Contractual) Applications for the following Contractual Teaching Position are...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2353 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Bioinformatics Protocols
By Rahul Nayak 3833 days agogenome.edu.au - RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well...
