The Laboratoire de Bioinformatique des Génomes et des Réseaux (Genome and Network Bioinformatics) is specialized in the conception, implementation, evaluation and application of bioinformatics approaches for the analysis of genome, transcriptome,...
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which...
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
Near Basant Vihar G.T. Road Bypass
P.O. Box No.129, Karnal-132001 (Haryana)
WALK-IN-INTERVIEW
A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal...
github.com - A comparative genome scaffolding tool based on MUMmer
mScaffolder scaffolds a genome using an existing high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the...
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually:
minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta...
github.com - The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
Using...
Post-doctoral Research Assistant in Genetics
Camden, North London
£31.1K per annum inclusive of London Weighting
This is a fixed term post for 36 months.
We wish to recruit a highly motivated, postdoctoral scientist to carry out a BBSRC...
The Roth Lab seeks insight into biological systems through genome- and proteome-scale experimentation and analysis.
Current computational interests:
Systematic analysis of genetic epistasis to identify redundant or compensatory systems and to...