Abhimanyu Singh
A bioinformatics beginner
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FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2973 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...Bioinformatics Project Assistant at NITW
NATIONAL INSTITUTE OF TECHNOLOGY WARANGAL – 506 004 DEPARTMENT OF BIOTECHNOLOGY No. NITW/Bio/ Date: 30th March 2015 ADVERTISEMENT FOR PROJECT FELLOW (Research Staff) Applications are invited for the post of Project Fellow (Research...LoRMA: A tool for correcting sequencing errors in long reads
By Abhimanyu Singh 2955 days agogite.lirmm.fr - An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...Bioinformatics RA at IVRI
A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural...Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
By Neel 2912 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2...JRF Bioinformatics @ NATIONAL INSTITUTE OF IMMUNOLOGY NEW DELHI-110067
Applications are invited for the position of Junior Research Fellow (Project)/Senior Research Fellow (Project) for the following time-bound sponsored project as per the details given below: 1. “Development of bioinformatics methods for...SViper: Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact...
By Neel 2484 days agogithub.com - Call sviper ~$ ./sviper -s short-reads.bam -l long-reads.bam -r ref.fa -c variants.vcf -o polished_variants This will output a polished_variants.vcf file, that contains all the refined variants. Sometimes it is helpful to look at the...IGIB Recruitment 2015 – Project Scientist
IGIB Recruitment 2015 – Project Scientist & SPF Posts: CSIR – Institute of Genomics & Integrative Biology (IGIB) has issued notification for the recruitment of Project Scientist, Sr Project Fellow vacancies on temporary basis for project...Free Genomics data !
By BioStar 2436 days agowww.darwintreeoflife.org - The specimens were collected by the Oxford Wytham Woods and Edinburgh Lohse lab teams. DNA extraction and sequencing was carried out by the Sanger Institute Scientific Operations teams. Assemblies were carried out by the Tree of Life team (Shane...
BINC Sample Question Paper !!!
By Jitendra Narayan 4194 days agoBINC sample question paper round TWO.
