Bulbul
Bioinformatician
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nanofilt: Filtering and trimming of long read sequencing data
By Jit 2342 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...Alessandra Carbone Lab
Our group works on various problems connected with the functioning and evolution of biological systems. We use mathematical tools, coming from statistics and combinatorics, algorithmic tools and molecular physics tools to study basic principles of...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2261 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...X. Shirley Liu Lab
The research in our laboratories are focused on the following three areas: Bioinformatics Cancer Epigenetics More at http://liulab.dfci.harvard.edu/nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2157 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...RA Bioinformatics at NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P.O. Box No.129 Karnal - 132001 (Haryana) WALK-IN-INTERVIEW A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 1806 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...JRF Position – Bioinformatics Department, Aravind Medical Research Foundation (AMRF), Madurai.
Applications are invited from eligible candidates for the post of Junior Research Fellow (JRF) to work at the Department of Bioinformatics, Aravind Medical Research Foundation in the following DST-SERB funded project “Clinical exome analysis...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1774 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...
Pattern Matching Problem Solution with Perl
Last updated 3488 days ago by JitProblem at http://rosalind.info/problems/1c/ #Find all occurrences of a pattern in a string.#Given: Strings Pattern and Genome.#Return: All starting positions in Genome where Pattern appears as a substring. Use 0-based indexing.use strict;use...
