Abhimanyu Singh
A bioinformatics beginner
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Genomics for Bioinformatician
Last updated 4143 days ago by Jitendra NarayanGenomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping efforts. The field also includes studies of intragenomic phenomena such as...Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
By Jit 2511 days agowww.sanger.ac.uk - Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif...GenomeThreader: Gene Prediction Software
By Neel 2242 days agogenomethreader.org - GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via...DarkHorse: a method for genome-wide prediction of horizontal gene transfer
By Jit 2710 days agowww.ncbi.nlm.nih.gov - A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or...KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
By Jit 2226 days agokobas.cbi.pku.edu.cn - KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations...MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
By BioStar 1457 days agogithub.com - The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without...RA at ALAGAPPA UNIVERSITY
DEPARTMENT OF BIOTECHNOLOGY (UGC SAP and DST-FIST & PURSE Sponsored Department) ALAGAPPA UNIVERSITY (A State University Accredited by NAAC with „A‟ Grade) Karaikudi - 630 004, India WALK IN INTERVIEW A walk-in Interview for the...A comprehensive atlas of human gene activity released !!!
By Abhimanyu Singh 3734 days agoA large international consortium of researchers has produced the first comprehensive, detailed map of the way genes work across the major cells and tissues of the human body.dcGOR
By Martin Jones 3667 days agoan R package for analysing ontologies and protein domain annotations
