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FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
By Neel 2979 days agogithub.com - FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FMLRC will build an FM-index and use...Roderic Guigó Lab
Research in our group focuses on the investigation of the signals involved in gene specification in genomic sequences (promoter elements, splice sites, translation initiation sites, etc…). We are interested both in the mechanism of their recognition...rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2936 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...Bioinformatics JRF/SRF position at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics -...ClipCrop: a tool for detecting structural variations with single-base resolution using...
By BioJoker 2817 days agogithub.com - ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the performance of ClipCrop with other SV-detecting tools, we generated...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 2444 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtURDIP Pune Bioinformatics SRF/PA Openings
CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS NCL Campus, S.No.113,114, Pashan, Pune 411 008 ADVERTISEMENT NO. - URDIP/ 5/2014 Learning opportunity for young Science and Engineering professionals to make a career in...Filtlong: quality filtering tool for long reads
By Radha Agarkar 2338 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...Bioinformatics SVIMS Project Assistant Walk IN
SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES TIRUPATI, ANDHRA PRADESH, INDIA- 517 507 BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS...
