Shruti Paniwala
A Bioinformatician
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Rosenberg lab
Research. Research in the lab focuses on mathematical, statistical, and computational problems in evolutionary biology and human genetics. Long-term interests of the lab include topics such as: Human genetic variation Inference of human...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2212 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...JRF Bioinformatics @ ICAR - National Research Centre for Orchids Pakyong
ICAR - National Research Centre for Orchids Pakyong F.No:NRCO/Admn/DBT /136 / Walk-in-Interviews will be held at 737106, Sikkim for the post of 01 (One Project ‘DBT’s Twinning programme for the NE’ titled “Assessment of some fragrant...FiNGS: Filters for Next Generation Sequencing
By Neel 1837 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...
Frequent words problem solution by Perl
Last updated 3926 days ago by JitSolved with perl http://rosalind.info/problems/1a/ #Find the most frequent k-mers in a string.#Given: A DNA string Text and an integer k.#Return: All most frequent k-mers in Text (in any order).use strict;use warnings;my...-
Libraries or management tools for high throughput sequencing data
Last updated 522 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop... -
Clump Finding Problem Solved with Perl
Last updated 3007 days ago by JitThe question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2713 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
By Abhimanyu Singh 2419 days agogithub.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...RA at University of Delhi
Research Scientist Jobs opportunity in University of Delhi on temporary basis Qualifications : Ph. D. Desirable : Experience on DNA Markers, plant genome mapping and bioinformatics No. of Post : 03 Department : Genetics Salary : Rs....
