Jitendra Narayan
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Opera: An optimal genome scaffolding program
By Jit 2545 days agosourceforge.net - Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from...Golden Rules of Bioinformatics
By Jitendra Narayan 4111 days agoBioinformatics rules to tickle your funny bone :)Bandage: interactive visualization of de novo genome assemblies
By Shruti Paniwala 2538 days agorrwick.github.io - Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes,...Taverna Workflow Management System
By Madhvan Reddy 4110 days agowww.taverna.org.uk - Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and is funded through a range of organisations and...Mash: fast genome and metagenome distance estimation using MinHash
By Jit 2530 days agogithub.com - Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is...Bioinformatics Infrastructure Facility (BIF), Gargi College, University of Delhi @ Traineeship
Gargi College was established in the year 1967 and is a leading South Campus college of the University of Delhi. It is a college for women and offers education in Arts and Humanities, Commerce, Science and Education. Gargi believes in its mission...MUMmer4: A fast and versatile genome alignment system
By Jit 2477 days agomummer4.github.io - MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing...Bioinformatics 101 - Running BLAST
By Poonam Mahapatra 4091 days agoHow to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the Tomato Disease Workshop 2010. For more information, please...Metassembler: merging and optimizing de novo genome assemblies
By Rahul Nayak 2383 days agosourceforge.net - Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multiple algorithms in an attempt to find the single best...CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007 POSITIONS OPEN FOR TEMPORARY RESEARCH PROJECT POSTS (Date of interview 23rd September 2013 at 10:30 AM) CSIR-Institute of Genomics & Integrative Biology...
