Jit
Enthusiast computational biologist with business dream !!!
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Jabba: Hybrid Error Correction for Long Sequencing Reads
By Jit 3201 days agogithub.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...XAMPP: Starting Apache fail Ubuntu
By Ram Yash Pal 4509 days ago Comments (1)Just press Ctrl+Alt+T on your keyboard to open Terminal. When it opens, run the command(s) below:Porechop: tool for finding and removing adapters from Oxford Nanopore reads
By Rahul Nayak 3057 days agogithub.com - Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop...Genomic Medicine - Bruce Korf (2014)
By Neel 4492 days agoMay 21, 2014 - Current Topics in Genome Analysis 2014 A lecture series covering contemporary areas in genomics and bioinformatics. More: http://www.genome.gov/COURSE2014lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2875 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...Faculty Positions at Central University of Punjab
Faculty Positions: Rolling/Open Advertisement Advt.No: T-10 (2013) Pay Scale: Pay Band Rs.15600-39100 with AGP of Rs.6,000/- Essential Qualifications for Professors, Associate Professors, and Assistant Professors: As per “UGC REGULATIONS ON...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 3062 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Integrative Genomics Viewer (IGV) tutorial
By Neel 4474 days agowikis.utexas.edu - The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted...COSMOS, our workflow management system for NGS data
By Jit 4463 days agocosmos.hms.harvard.edu - COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al....
