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ReMILO: reference assisted misassembly detection algorithm using short and long reads.
By Jit 2892 days agogithub.com - ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called...A History of Bioinformatics (in the Year 2039)
By Martin Jones 4336 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039SimLoRD: A read simulator for third generation sequencing reads
By Aaryan Lokwani 2845 days agobitbucket.org - SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference...Scientists map 17,294 proteins produced in human body
By Jit 4392 days ago17,294 proteins mapped in 30 organs of human bodyPANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the...
By BioStar 2815 days agogithub.com - Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple...Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
By BioStar 2763 days agogithub.com - Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source...Genomics and Personalized Medicine
By Rahul Nayak 4388 days ago(October 20, 2009) Michael Snyder, Professor of Genetics and Chair of the Department of Genetics at Stanford, discusses advances in gene sequencing, the impact of genomics on medicine, the potential for personalized medicine. and efforts at Stanford...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 2321 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...Adhoc Bioinformatics Faculty Position @ NIT
NATIONAL INSTITUTE OF TECHNOLOGY, DEPARTMENT OF BIOTECHNOLOGY, WARANGAL – 506 021, Andhra Pradesh No.NITW/BT/2014/adhoc APPLICATIONS ARE INVITED FOR THE APPOINTMENT OF ADHOC FACULTY ON CONTRACT BASIS IN THE DEAPARTMENT OF...Filtlong: quality filtering tool for long reads
By Radha Agarkar 2215 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...
