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github.com - KAD is designed for evaluating the accuracy of nucleotide base quality of genome assemblies. Briefly, abundance of k-mers are quantified for both sequencing reads and assembly sequences. Comparison of the two values results in a single value per...

Project Title BIOINFORMATICS SUB DIC (DIC) Reference Number IIT/SRIC/R/DIC/2014/314, DATED 28thNovember, 2014 Temporary Position(s) i) Junior/ Senior Project Officer (1) ii) Junior Project Assistant (2) Consolidated Compensation i)...

github.com - Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce...

optimize HiFi reads

ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology / MBA / MCA students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career...

Palindromes are sequences of nucleotides that read the same backward as forward.

code.google.com - Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see...

journals.plos.org - Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illumina data on average has an error in some read...

Eligible candidates are invited for a walk-in-interview for recruitment of Teaching Assistant in the Department of Bioinformatics on 8.08.2015 at 10 A.M. in the Committee Hall, SVIMS, Tirupati. The candidates have to attend with all original...

github.com - NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file...