Jit
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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
By Poonam Mahapatra 2400 days agodoua.prabi.fr - One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies,...Appointment of two traineeships and two studentships in Bioinformatics
Jawaharlal Nehru TROPICAL BOTANIC GARDEN AND RESEARCH INSTITUTE An organization under the Kerala State Council for Science, Technology and Environment and National Centre of Excellence, Government of India Applications are invited for the...LSC :a long read error correction tool
By Jit 2341 days agowww.healthcare.uiowa.edu - Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LSC_requirements for running LSC. Download and set-up the LSC package. Follow the tutorial to see how...Sr Research Fellow & Technical Asst at Indian Institute of Maize Research - India
Indian Institute of Maize Research Jobs 2015 – Sr Research Fellow & Technical Asst Posts: Indian Institute of Maize Research (IIMR), New Delhi has advertised a notification for the recruitment of Senior Research Fellow & Technical...FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2323 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...Senior Technical Assistant at Pondicherry University
Senior Technical Assistant Eligibility : BE/B.Tech(CSE, ECE, IT) Location : Pondicherry Last Date : 26 Jun 2015 Hiring Process : Face to Face Interview Pondicherry University - Job DetailsDate of posting:19 May 15 Senior Technical...rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2289 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...ClipCrop: a tool for detecting structural variations with single-base resolution using...
By BioJoker 2170 days agogithub.com - ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the performance of ClipCrop with other SV-detecting tools, we generated...RA Bioinformatics at ICGED
Research Associate Position at ICGEB, New Delhi with Dr. Amit Sharma Starting 15th July 2015, the position relates to a project specifically for in silico drug docking, screening, design, optimisation and linkage with active chemists....
