Jit
Enthusiast computational biologist with business dream !!!
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How far can bioinformatics go creating organisms used for testing?
By Reshma Khatun 4161 days ago"I think you can get very far on a technical level. The problem is that a human body is more complex than just one cell." ... "At some point we still need clinical tests on animals and humans before we use it for real treatment. But we will likely...
Run miniasm assembler on nanopore reads !
Last updated 3003 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...Graduate research assistantships @ University of Nebraska-Lincoln (UNL)
Graduate research assistantships in quantitative genetics are available with Gota Morota in the Department of Animal Science at the University of Nebraska-Lincoln (UNL). Current projects in the Morota lab include developing kernel-based...TAREAN: A computational tool for identification and characterization of satellite DNA from...
By Surabhi Chaudhary 2855 days agobitbucket.org - TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their...JRF/SRF at University of Calcutta
Applications are invited to appear at a walk-in-interview for one post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high...GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2845 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...JRF in Bioinformatics @ Pondicherry University
Eager to get JRF job in Puducherry? Pondicherry University, School of Life Sciences, Centre for Bioinformatics has issued notification to fill the vacancy of JRF for DST sponsored research project entitled "Design and discovery of aurora kinase...JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
By Jit 2810 days agogithub.com - JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled...PhD opportunity / AiCADD fellowship (MHRD, Govt. of India) of University of Kerala.
No. DCB/DBT-BIF/229 /14-15 07-11-2014 Applications are invited for the AiCADD fellowship (MHRD, Govt. of India) of University of Kerala. The terms and...Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2698 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...
