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BioKit: a set of tools dedicated to bioinformatics, data visualisation
By Neel 160 days agobiokit.readthedocs.io - BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis...Huber Lab
The Huber group develops computational and statistical methods to design and analyse novel experimental approaches in genetics and cell biology. Future projects and goals Large-scale systematic maps of gene-gene and gene-environment...GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or...
By Shruti Paniwala 2359 days agoacademic.oup.com - GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achieving accurate and efficient gap...Asst. PROF IN BIOINFORMATICS at JAIPUR NATIONAL UNIVERSITY
JAIPUR NATIONAL UNIVERSITY, SCHOOL OF LIFE SCIENCES (SIILAS CAMPUS) URGENTLY REQUIRES Asst. PROF IN BIOINFORMATICS. QUALIFICATION: AS PER UGC DESIRABLE: 1 YEAR EXPERIENCE IN ACADEMICS CONTACT immediately Prof...GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
By Abhimanyu Singh 2743 days agogithub.com - GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which...Research Associate@ School of Computational and Integrative Sciences under Jawaharlal Nehru...
School of Computational and Integrative Sciences under Jawaharlal Nehru University, New Delhi invited applications for filling up 4 posts of Research Associates (RA) and Junior Research Fellow (JRF) (2 posts each) purely on temporary basis, liable...RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
By BioJoker 2048 days agogithub.com - Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into...Human Genome Meeting 2014, Geneva, Switzerland
The spectacular advances of the last few years resulted in the rapid analysis of the genome sequence of each individual. The biomedical world is now faced with the enormous challenges of assigning pathogenicity to each genomic variant, the...repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
By Jit 2440 days agogithub.com - Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is...Molecular and Computational Biology Research School
The ambition of the Molecular and Computational Biology Research School (MCB) is to create an attractive and stimulating training environment for PhD students in molecular and computational biology, both to better serve the needs for relevant...
