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Five points for bioinformatics software/tools
By Jitendra Narayan 4784 days ago Comments (1)Some five points to keep in mind for bioinformatics software/toolsThe anatomy of successful computational biology software
By Jitendra Narayan 4717 days agoCreators of software widely used in computational biology discuss the factors that contributed to their successTen recommendations for creating usable bioinformatics command line software
By RAJESH DETROJA 4477 days agowww.gigasciencejournal.com - Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten...
Software packages for next gen sequence analysis
Last updated 4100 days ago by Rahul Nayak Comments (5)Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection,...GKNO
By Neel 3764 days agohttp://gkno.me/ - gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise...-
Tools for Searching Repeats And Palindromic Sequences
Last updated 3069 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... Cytoscape
By Anjana 3762 days agohttp://www.cytoscape.org/ - Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network...GAEMR
By Jit 3740 days agowww.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...EasyBuild
By Jit 3512 days agohpcugent.github.io - EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.List of popular bioinformatics software/tools
By Jitendra Narayan 4803 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.
