Shruti Paniwala
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List of In-silico Binding Site Prediction Tools
Last updated 3945 days ago by Shikha LogwaniFollowing are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and...Protein function annotation and machine learning - UPMC - Paris, France
Protein function annotation and machine learning - UPMC - Paris, France Job Description: We are interested in finding an excellent postdoc with interests in protein functional annotation, machine learning and computer grids. The position is open...JRF/SRF at University of Calcutta
Applications are invited to appear at a walk-in-interview for one post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high...MetaPred2CS
By Manisha Mishra 2821 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...Foldit: Solve Puzzles for Science
By Robert M Willioms 2527 days agohttps://fold.it/ - Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with the UW Department of Biochemistry....-
Protein-Protein Interaction Sites Predictions !
Last updated 2403 days ago by Poonam MahapatraThe study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspects: The interaction partners of a specific protein and the amino acid residues... Understanding Fastqc Output
By Jit 3143 days agowww.bioinformatics.babraham.ac.uk - Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC content per sequence quality sequence length distribution More at...AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Jit 2338 days ago Comments (1)github.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC...KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
By Jit 2331 days ago Comments (1)github.com - KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1739 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...
