Jit
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Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
By Jit 2079 days agogithub.com - Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
By Jit 1853 days agogithub.com - Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz...Jaeger : an accurate and fast deep-learning tool to detect bacteriophage sequences
By LEGE 192 days agogithub.com - Jaeger is a tool that utilizes homology-free machine learning to identify phage genome sequences that are hidden within metagenomes. It is capable of detecting both phages and prophages within metagenomic assemblies.SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
By Neel 1907 days agogithub.com - The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...Boku Chair of Bioinformatics
The Bioinformatics group at Boku University has two main areas of interest, underpinning a common goal, the study of complex systems in living organisms. To overcome the engineered redundancies and combinatorial effects prevalent in higher...List of gene ontology software and tools
By Jit 4384 days ago Comments (9)The list of most commonly used old and new GO term enrichment determination toolsRA at ALAGAPPA UNIVERSITY
DEPARTMENT OF BIOTECHNOLOGY (UGC SAP and DST-FIST & PURSE Sponsored Department) ALAGAPPA UNIVERSITY (A State University Accredited by NAAC with „A‟ Grade) Karaikudi - 630 004, India WALK IN INTERVIEW A walk-in Interview for the...A comprehensive atlas of human gene activity released !!!
By Abhimanyu Singh 4207 days agoA large international consortium of researchers has produced the first comprehensive, detailed map of the way genes work across the major cells and tissues of the human body.Manolis Kellis Lab
A major focus of our lab is understanding the effects of genetic variation on molecular phenotypes and human disease. We develop methods for integrating diverse functional genomic datasets of transcription, chromatin modifications, regulator...Gene Finding and Predictions
By Poonam Mahapatra 3484 days agogenome.crg.es - In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by...
