Jit
Enthusiast computational biologist with business dream !!!
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List of generic simulation software/tools/resource with brief description and homepage !!!
Last updated 4411 days ago by JitList of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayesian Serial SimCoal Bayesian Serial SimCoal, (BayeSSC) is a modification of...Software developed in pevsner lab
By Robert M Willioms 4173 days agopevsnerlab.kennedykrieger.org - DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data...Picard
By Neel 3602 days agobroadinstitute.github.io - Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF...GAEMR
By Jit 3556 days agowww.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 3282 days agoStructural variation caller tools using long readssimNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
By Jit 3024 days agowww.ebi.ac.uk - simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations only incorporate noise due to sequencing and do not incorporate effects from...EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
By Rahul Nayak 2864 days agoarthropods.eugenes.org - EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 452 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...-
Awesome perl frameworks, libraries and software - PART 4
Last updated 3169 days ago by Neeltjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-resty-memcached - Lua memcached client driver for the ngx_lua based on the... String graph based genome assembly software and tools !
By Rahul Nayak 3003 days agoIn graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.
