Jit
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2622 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Jit 2237 days agogithub.com - MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result, annotate mitogenome (genbank file as result), and mitogenome...PhD position in Translational Medicine
https://www.jobvector.de/jobs-stellenangebote/biologie-life-sciences/wissenschaftliche-r-mitarbeiter-in/phd-position-translational-medicine-129981.html?suid=1b510358c7578e8f75cf04a464fc21a404a574ca Essential experience / qualifications: Master /...McClintock: Meta-pipeline to identify transposable element insertions using next generation...
By BioStar 1961 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 540 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...NanoSim: nanopore sequence read simulator based on statistical characterization.
By Jit 3004 days agowww.bcgsc.ca - NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides...
Which are the best statistical programming languages to study for a bioinformatician?
Jitendra Narayan 4626 days agoSmyth Lab
Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolutionised biology. Making the most of this revolution requires the...Welch Lab
They are based in the Department of Genetics at the University of Cambridge. The research covers diverse areas of evolutionary biology, and molecular evolution in particular. It combines theoretical and empirical approaches, and particularly...ISCB-Asia 2013 Translational Bioinformatics Conference
ISCB-Asia 2013 Translational Bioinformatics Conference Seoul, Korea October 2 - 4, 2013 For more information visit: http://www.snubi.org/TBC2013/
