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FastProNGS: fast preprocessing of next-generation sequencing reads
By Rahul Nayak 1427 days agogithub.com - FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...
Libraries or management tools for high throughput sequencing data
Last updated 50 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale...
By Jit 2221 days agogithub.com - The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc...Classification of SARS-CoV2 Variant !
By Jit 1092 days agoThe scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage:Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 1760 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...maftools
By Surabhi Chaudhary 1071 days agogithub.com - With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type...Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Rahul Nayak 2566 days agogithub.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good...Sequencing Solutions to World Health
By Rahul Agarwal 4103 days agowww.lifetechnologies.com - "New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies-
Genome Browsers
Last updated 4116 days ago by Rahul Agarwal Comments (2)Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available... Two major breakthrough!!
By Rahul Agarwal 4099 days agoHigh-value Tannat grape sequenced and $1 syphilis detection test
