Rahul Nayak
A Bioinformatician
Our Sponsors
Related items
rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2722 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 2315 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 1905 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Tools to detect synteny blocks regions among multiple genomes
By Jitendra Narayan 4555 days ago Comments (24)Collections of synteny detection tools and related materialsComparative genomics educational material and papers bookmarks
By Jit 3405 days ago Comments (5)www.nature.com - Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions...VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
By Abhimanyu Singh 2685 days agowww.ncbi.nlm.nih.gov - VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and...flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
By Jit 2143 days agogithub.com - FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone sequences, FlexiDot harbors routines for strict and...JCVI utility libraries
By Jit 1763 days agogithub.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.Des Higgins: Visualizing Multiple Sequence Alignments
By Shruti Paniwala 4392 days agoCopyright Broad Institute, 2013. All rights reserved. Des Higgins (http://www.bioinf.ucd.ie) gives a very entertaining introduction to the visualization of multiple sequence alignment, and to his widely-used Clustal tool. He highlights the emerging...deepTools
By Martin Jones 4137 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
