Rahul Nayak
A Bioinformatician
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SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
By Jit 2317 days agosynvisio.github.io - SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an...poRe: an R package for the visualization and analysis of nanopore sequencing data
By Jit 3237 days ago Comments (1)academic.oup.com - Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 3023 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesMulan: Multiple-sequence local alignment and visualization for studying function and evolution
By Jit 2963 days agowww.ncbi.nlm.nih.gov - Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functional...GfaViz: flexible and interactive visualization of GFA sequence graphs
By Jit 2446 days agogithub.com - GFA (Graphical Fragment Assembly) is an emerging standard format for representing sequence graphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more general,...Proksee: in-depth characterization and visualization of bacterial genomes
By LEGE 1244 days agohttps://proksee.ca/ - Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic...
By LEGE 754 days agogithub.com - NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes NGenomeSyn [multiple (N) Genome Synteny], for publication-ready visualization of syntenic relationships of...CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
By Shruti Paniwala 2152 days agogitlab.gwdg.de - CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks...dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2782 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testingNew born babies get ready to know their whole genome soon!!!
By Rahul Agarwal 4777 days agoSequencing of hundreds of newborns
